{
  "_id": "6a21319fcd65a98ecbd255c0",
  "Package": "poolVIM",
  "Type": "Package",
  "Title": "Gene-Based Association Tests using the Actual Impurity Reduction\n(AIR) Variable Importance. <doi:10.1093/Bioinformatics/Bty373>",
  "Version": "1.0.0",
  "Date": "2018-07-25",
  "Author": "Stefano Nembrini <stefanonembrini@gmail.com>",
  "Maintainer": "Stefano Nembrini <stefanonembrini@gmail.com>",
  "Description": "Gene-based association tests using the actual impurity\nreduction (AIR) variable importance. The function aggregates\nAIR importance measures from a group of SNPs or probes and\noutputs a p-value for each gene.",
  "License": "GPL (>= 2)",
  "RoxygenNote": "6.0.1",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev",
  "Repository": "https://snembrini.r-universe.dev",
  "Date/Publication": "2018-07-30 14:26:04 UTC",
  "RemoteUrl": "https://github.com/snembrini/poolvim",
  "RemoteRef": "HEAD",
  "RemoteSha": "fb2e440c73d15f80d93ba5b546c219b31260316f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 08:01:25 UTC",
    "User": "root"
  },
  "MD5sum": "f744996ad1139692e5d245b66c06f0f1",
  "_user": "snembrini",
  "_type": "src",
  "_file": "poolVIM_1.0.0.tar.gz",
  "_fileid": "db46cb6889b0416ba52300b63321a3117b355e500427764982ce077320dcad15",
  "_filesize": 83072,
  "_sha256": "db46cb6889b0416ba52300b63321a3117b355e500427764982ce077320dcad15",
  "_created": "2026-06-04T08:01:25.000Z",
  "_published": "2026-06-04T08:04:47.564Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79475528925,
      "time": 165,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7406173085"
    },
    {
      "job": 79475528966,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406161767"
    },
    {
      "job": 79475528948,
      "time": 167,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7406164996"
    },
    {
      "job": 79475528912,
      "time": 158,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406162001"
    },
    {
      "job": 79474983055,
      "time": 201,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406119048"
    },
    {
      "job": 79475528957,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406156393"
    },
    {
      "job": 79475528941,
      "time": 121,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7406158863"
    },
    {
      "job": 79475529000,
      "time": 105,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7406153212"
    },
    {
      "job": 79475528960,
      "time": 120,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7406157720"
    }
  ],
  "_buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/snembrini/poolvim",
  "_commit": {
    "id": "fb2e440c73d15f80d93ba5b546c219b31260316f",
    "author": "Stefano Nembrini <stefanonembrini@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Add files via upload",
    "time": 1532960764
  },
  "_maintainer": {
    "name": "Stefano Nembrini",
    "email": "stefanonembrini@gmail.com",
    "login": "snembrini",
    "description": "",
    "uuid": 23141168
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.1",
      "role": "Depends"
    },
    {
      "package": "EmpiricalBrownsMethod",
      "version": ">= 1.6.0",
      "role": "Depends"
    },
    {
      "package": "Hmisc",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ranger",
      "role": "Imports"
    }
  ],
  "_owner": "snembrini",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "snembrini",
      "count": 5,
      "uuid": 23141168
    }
  ],
  "_userbio": {
    "uuid": 23141168,
    "type": "user",
    "name": "Stefano Nembrini"
  },
  "_downloads": {
    "count": 127,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/poolVIM"
  },
  "_devurl": "https://github.com/snembrini/poolvim",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/poolVIM.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/snembrini/poolvim",
  "_realowner": "snembrini",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2018-07-30"
    }
  ],
  "_exports": [
    "poolVIM"
  ],
  "_help": [
    {
      "page": "fisher",
      "title": "fisher",
      "topics": [
        "fisher"
      ]
    },
    {
      "page": "gaussianize",
      "title": "gaussianize null variable importances",
      "topics": [
        "gaussianize"
      ]
    },
    {
      "page": "m_effective",
      "title": "meff. written by Ozan Cinar and Wolfgang Viechtbauer.",
      "topics": [
        "m_effective"
      ]
    },
    {
      "page": "poolVIM",
      "title": "after the Actual Impurity Reduction Importance is computed with a Random Forest, pvalues from different probes or SNPs belonging to the same gene can be aggregated in order to obtain a single pvalue for that gene. Correlation between probes can also be taken into account.",
      "topics": [
        "poolVIM"
      ]
    },
    {
      "page": "tippett",
      "title": "tippett.",
      "topics": [
        "tippett"
      ]
    }
  ],
  "_readme": "https://github.com/snembrini/poolvim/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "base64enc",
    "bslib",
    "cachem",
    "checkmate",
    "cli",
    "cluster",
    "colorspace",
    "cpp11",
    "data.table",
    "digest",
    "EmpiricalBrownsMethod",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "foreign",
    "Formula",
    "fs",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "highr",
    "Hmisc",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "nnet",
    "R6",
    "ranger",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "rmarkdown",
    "rpart",
    "rstudioapi",
    "S7",
    "sass",
    "scales",
    "stringi",
    "stringr",
    "tinytex",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "yaml"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "poolvim",
  "_universes": [
    "snembrini"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:52.000Z",
      "distro": "noble",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "d7017a8f6ceff4e9115524610214737fb9bf51890a99fc26e552f2ec1f6b348c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:21.000Z",
      "distro": "noble",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "0910ee1790d564c27d5c42081c4055b16e950be1276a1cb19c5b729be7c95fda",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:40.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "d9a09fb041cc8a28aad88d576b5bfafda080006e4f372961dcb100bead981be8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:26.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "26c2841e6117be5aa4150b227c4dcf60c077379dadb92f637cf3753049fe060d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:38.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "19fe68b9a6b24bfcf3633f9a72b8e1b98d458a455a7f903bb396d686d30744f7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-04T08:03:04.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "887718110b9901309d18129f9a0f11016812494382d1841027bb2a4ba174bfa4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-04T08:02:46.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "7fb9f045f1262247c3c6f17b8738d11325bfb4476501d71fd992eb75333236a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-04T08:02:56.000Z",
      "commit": "fb2e440c73d15f80d93ba5b546c219b31260316f",
      "fileid": "1a7de17211e2a3e9ff38f53f7843c23c5744bebccbd28cf67f69bc037d9c54f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/snembrini/actions/runs/26938816003"
    }
  ]
}